According to many dealers and field feedback, the #1 cause is letting go of the stop switch before the engine has come to a complete stop. In the tech bulletin, Gravely is less than absolute regarding this issue but the field data fully supports the theory that it is caused by letting go of the stop switch before the engine comes to complete stop.
The data is this:
In every case where the flywheels were thrown out of alignment the tractor had:
Electric start
Pushbutton stop switch
It never happened if the tractor had a toggle stop switch and it never happened on manual start engines.
http://www.oldgravelys.net/pdf/Bulletin_968_19620625.pdf